PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G208700.1
Common NameB456_005G208700, LOC105794944
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 322aa    MW: 36488 Da    PI: 6.7769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G208700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.5e-08170215555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+e  r+RR++  ++   L++l+P++     kK++ a++L++A +YI+ Lq
  Gorai.005G208700.1 170 HSELARKRRQKRSDKTRCLQKLMPWD-----KKMDMATMLQEAYKYIRFLQ 215
                         89999********************9.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.919165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-10170222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-7170219No hitNo description
SMARTSM003534.9E-6171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKMEEYDFCS TLHPLHSYAP SPFTSSVHNP EFNNMMINSH EPKLFNDPNL RSLFPLPYEP  60
DGPCCFFTPD PDPDPIFPSL PLPDLDFSLF SSDIPDPASH PLLNLPSPPL FLSDLRPLHR  120
LPPLSASSTP KSKRTRLDLV LSHSDNNPQT LDSIVKSFNA PPPPPPIIPH SELARKRRQK  180
RSDKTRCLQK LMPWDKKMDM ATMLQEAYKY IRFLQAQVSI LQSMPITSSF VSITQHLNNA  240
SFEVDFAGLE RLNRQQLLQV LINSPMAQTM LCSQGLCVFA TEQLVSLNKA KERKTMLQQF  300
LFGRESDRLS DIAFVCACDE Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479802.10.0PREDICTED: transcription factor bHLH117
TrEMBLA0A0D2RQD60.0A0A0D2RQD6_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-28bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]